BPadvertisementfrom

  • Subscribe to our RSS feed.
  • Twitter
  • StumbleUpon
  • Reddit
  • Facebook
  • Digg

Friday, 13 July 2012

Whole-genome sequence from 10 to 20 human cells

Posted on 15:13 by Unknown
This new Nature paper describes a genotyping technique that can be performed using only a small number of human cells. One implication is that we are close to non-destructive sequencing of human gametes and zygotes. For example, parents participating in IVF can potentially genotype fertilized eggs before deciding which to implant.
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells (Nature) 
... we describe a low-cost DNA sequencing and haplotyping process, long fragment read (LFR) technology, which is similar to sequencing long single DNA molecules without cloning or separation of metaphase chromosomes. In this study, ten LFR libraries were made using only ~100 picograms of human DNA per sample. Up to 97% of the heterozygous single nucleotide variants were assembled into long haplotype contigs. Removal of false positive single nucleotide variants not phased by multiple LFR haplotypes resulted in a final genome error rate of 1 in 10 megabases. Cost-effective and accurate genome sequencing and haplotyping from 10–20 human cells, as demonstrated here, will enable comprehensive genetic studies and diverse clinical applications.
See this earlier post Maxwell's Demon and genetic engineering:
... The amount of variation in intelligence within a particular family is almost as large as in the population as a whole, mainly due to the diploid nature of our genomes (half of the genes come randomly from each parent). Thus, as Fisher noted, superior characteristics do not "breed true" ... It is unlikely for a particular descendant to inherit most of the positive variants from both the mother and the father. If loci with positive effect on intelligence were identified, and selection performed on gametes (or zygotes), one could ensure offspring with many more advantageous alleles than normally obtained by chance. We would obtain the best from the set of possible offspring of a given mother and father. A process of this type can be thought of as a Maxwell's Demon of reproduction -- it suppresses fluctuations of the wrong sign.
Email ThisBlogThis!Share to XShare to FacebookShare to Pinterest
Posted in genetic engineering, genetics, science, technology | No comments
Newer Post Older Post Home

0 comments:

Post a Comment

Subscribe to: Post Comments (Atom)

Popular Posts

  • PhD Comics: the movie
    PHD Movie Trailer from PHD Comics on Vimeo . I met Jorge Cham , the cartoonist who draws PhD Comics, a few years ago at Sci Foo. Cham was ...
  • Finding the Next Einstein
    Duke researcher Jonathan Wai interviewed me for his Psychology Today blog, Finding the Next Einstein . Below are my answers to two of his q...
  • Beanbags and causal variants
    Not only do these results implicate common causal variants as the source of heritability in disease susceptibility, but they also suggest th...
  • Sitzfleisch
    Freeman Dyson reviews the new biography of Oppenheimer by Ray Monk. I discussed the book already here . NYBooks : ... The subtitle, “A Life ...
  • "Only he was fully awake"
    A great quote from this review of George Dyson's Turing's Cathedral . Despite the title, von Neumann is the central character. ... ...
  • A blog is born
    Raghu Parasarathy , a biophysicist at U Oregon, and my correspondent in this previous post on faculty blogging, has decided to try it out. ...
  • News from Microsoft Research Faculty Summit 2013
    Measuring the maximal commuting subset of observables uniquely determines the pure state of a quantum system (recently proved Kadison-Singer...
  • Talk cancelled
    This talk has been cancelled, for complex reasons that I will not discuss.
  • East Asian sociopaths?
    Some would assert that CEOs and other people in leadership positions are often warm sociopaths . Interestingly, it is claimed that there is ...
  • Swedish height in the 20th century
    Average height of Swedish military conscripts during the 20th century. Looks like an increase of roughly 1 cm per decade or about 1.5 SD in ...

Categories

  • ability (2)
  • academia (9)
  • affirmative action (8)
  • ai (13)
  • aig (1)
  • alan turing (3)
  • algorithms (2)
  • alpha (2)
  • american society (54)
  • art (3)
  • ashkenazim (1)
  • aspergers (4)
  • athletics (6)
  • autism (4)
  • autobiographical (13)
  • basketball (4)
  • bayes (1)
  • behavioral economics (4)
  • berkeley (5)
  • bgi (24)
  • biology (23)
  • biotech (6)
  • bjj (5)
  • black holes (4)
  • blade runner (2)
  • blogging (3)
  • books (5)
  • borges (2)
  • bounded rationality (10)
  • brainpower (57)
  • bubbles (3)
  • caltech (14)
  • cambridge uk (1)
  • careers (18)
  • charles darwin (1)
  • chet baker (2)
  • China (25)
  • christmas (1)
  • class (2)
  • cognitive science (35)
  • cold war (1)
  • complexity (1)
  • computing (9)
  • conferences (4)
  • cosmology (4)
  • creativity (3)
  • credit crisis (10)
  • crossfit (5)
  • cryptography (2)
  • data mining (4)
  • dating (2)
  • demographics (1)
  • derivatives (5)
  • determinism (1)
  • digital books (1)
  • dna (4)
  • economic history (5)
  • economics (38)
  • econtalk (2)
  • ecosystems (1)
  • education (5)
  • efficient markets (8)
  • Einstein (2)
  • elitism (14)
  • encryption (1)
  • energy (1)
  • entrepreneurs (3)
  • entropy (1)
  • environmentalism (1)
  • eugene (3)
  • evolution (19)
  • expert prediction (6)
  • fake alpha (2)
  • feminism (2)
  • Fermi problems (2)
  • feynman (7)
  • film (9)
  • finance (42)
  • fitness (3)
  • flynn effect (1)
  • foo camp (1)
  • football (5)
  • france (1)
  • free will (1)
  • freeman dyson (2)
  • fx (2)
  • game theory (1)
  • geeks (2)
  • gender (4)
  • genetic engineering (15)
  • genetics (79)
  • genius (24)
  • genomics (2)
  • geopolitics (7)
  • gilded age (13)
  • global warming (1)
  • globalization (23)
  • godel (2)
  • goldman sachs (2)
  • google (4)
  • happiness (2)
  • harvard (8)
  • harvard society of fellows (5)
  • hedge funds (4)
  • hedonic treadmill (1)
  • height (2)
  • higher education (38)
  • history (8)
  • history of science (12)
  • hormones (3)
  • hugh everett (2)
  • human capital (34)
  • humor (1)
  • income inequality (21)
  • india (2)
  • industrial revolution (1)
  • innovation (38)
  • intellectual history (10)
  • intellectual property (1)
  • intellectual ventures (1)
  • internet (4)
  • iq (16)
  • italy (4)
  • james salter (3)
  • japan (4)
  • jiujitsu (8)
  • keynes (1)
  • kids (13)
  • lewontin fallacy (1)
  • lhc (1)
  • literature (12)
  • luck (1)
  • machine learning (8)
  • malcolm gladwell (1)
  • manhattan (2)
  • many worlds (10)
  • mathematics (14)
  • meritocracy (7)
  • microsoft (2)
  • mma (10)
  • monsters (2)
  • moore's law (1)
  • movies (9)
  • MSU (18)
  • music (5)
  • mutants (2)
  • nathan myhrvold (1)
  • neal stephenson (1)
  • neanderthals (2)
  • nerds (3)
  • net worth (5)
  • neuroscience (7)
  • new yorker (1)
  • nicholas metropolis (1)
  • noam chomsky (2)
  • nobel prize (2)
  • nsa (2)
  • nuclear weapons (5)
  • obama (7)
  • olympics (4)
  • oppenheimer (7)
  • patents (1)
  • personality (9)
  • philip k. dick (1)
  • philosophy of mind (2)
  • photos (40)
  • physical training (13)
  • physics (73)
  • podcasts (10)
  • political correctness (6)
  • politics (4)
  • pop culture (2)
  • prisoner's dilemma (1)
  • privacy (2)
  • probability (5)
  • prostitution (2)
  • psychology (25)
  • psychometrics (31)
  • qcd (1)
  • quants (9)
  • quantum computers (2)
  • quantum field theory (3)
  • quantum mechanics (18)
  • race relations (10)
  • real estate (1)
  • realpolitik (6)
  • renaissance technologies (1)
  • research (3)
  • russia (2)
  • sad but true (2)
  • sci fi (8)
  • science (42)
  • sec (1)
  • security (5)
  • silicon valley (6)
  • singularity (1)
  • smpy (1)
  • social networks (2)
  • social science (12)
  • software development (2)
  • solar energy (1)
  • sports (13)
  • startups (19)
  • statistics (16)
  • success (2)
  • taiwan (1)
  • talks (16)
  • teaching (2)
  • technology (34)
  • television (2)
  • travel (24)
  • turing test (1)
  • ufc (8)
  • ultimate fighting (1)
  • universities (33)
  • university of oregon (6)
  • usain bolt (2)
  • venture capital (3)
  • volatility (1)
  • von Neumann (10)
  • wall street (2)
  • war (1)
  • warren buffet (1)
  • wwii (3)

Blog Archive

  • ►  2013 (134)
    • ►  August (10)
    • ►  July (15)
    • ►  June (22)
    • ►  May (20)
    • ►  April (21)
    • ►  March (18)
    • ►  February (14)
    • ►  January (14)
  • ▼  2012 (222)
    • ►  December (17)
    • ►  November (19)
    • ►  October (20)
    • ►  September (25)
    • ►  August (19)
    • ▼  July (18)
      • Iterated Prisoner's Dilemma is an Ultimatum Game
      • MSU photos
      • Genome sequencing of human sperm
      • Michigan State University
      • Up in Michigan
      • Reliable Organization of Unreliable Elements
      • Resolved: the 21st century will belong to China
      • Whole-genome sequence from 10 to 20 human cells
      • Death penalty
      • Khan Academy and online learning
      • Rare variants and human genetic diversity
      • Child probabilist
      • The Hedge Fund Mirage
      • Whole genome cancer therapy
      • Nice guys finish last
      • Hacker hostels
      • Chomsky: genetic barriers to scientific progress
      • Higgs boson explained
    • ►  June (16)
    • ►  May (20)
    • ►  April (16)
    • ►  March (18)
    • ►  February (20)
    • ►  January (14)
  • ►  2011 (144)
    • ►  December (20)
    • ►  November (16)
    • ►  October (25)
    • ►  September (23)
    • ►  August (21)
    • ►  July (26)
    • ►  June (13)
Powered by Blogger.

About Me

Unknown
View my complete profile